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Welcome to Malariapedia.info - the semantic wiki of MalariaBase.org
 
 

This is an experimental prototype of a semantic wiki containing genome data from species related to malaria. Right now about 40000 articles with information from Ensembl/BioMart about Anopheles gambiae genes, transcripts and proteins have been loaded as semantic properties to serve as test bed for the development of the query interface and the display options for semantic data. Similar information about Plasmodium falciparum is available in over 6000 articles either retrieved from the Plasmo DB or intgrated as linked external data.

 

Anopheles
gambiae

chromosome (number of genes)

12820 genes
6863 transcripts
6787 proteins

 

   Plasmodium
falciparum

chromosome (number of genes)

12820 genes

 

Queryform

Querible Items drag 
name 

Namespaces

  • NS-Anopheles
  • NS-Plasmodium

Categories

  • CAT-Anopheles gambiae
  • CAT-Plasmodium falciparum

Concepts

  • SelectByLocation
  • SelectByLocation_1
  • Chromosome_Name=X
  • Chromosome_Name_X
  • Chromosome_Name_2L
  • true
  • xxxgzxxx

LOCATION

  • Genus
  • Species
  • Organism
  • Chromosome Name
  • Band
  • Strand
  • Gene Start (bp)
  • Transcript Start (bp)
  • Gene End (bp)
  • Transcript End (bp)

NAMEID

  • NameId
  • Ensembl Gene ID
  • Ensembl Transcript ID
  • Ensembl Protein ID
  • Old Ensembl ID
  • FlyMine primary identifier

GO

  • GOannotation
  • GOslim
  • GOsynonym

External data AGGEPUCI

Anopheles gambiae Gene Expression Profile (UC Irvine)
  • keyword (ED-2)
  • stage (ED-1)
  • tissue (ED-3)

Selected Items

  1. Drop item names here

Info

 Local Settings
Default Namespaces:Anopheles
Default Article parameters:[[Category:MainArticle]]

Query form

Return as name  Save also as SMW Concept
  Result name (optional prefix name with 'Project|')

Resultsets
          No resultsets found

<news limit="5" unique namespaces="Anopheles|Talk" categories="MainArticle">

  • [[{{{pagename}}}]] {{{timeanddate}}}

</news>

Top total rankings  Top rankings by
Template:CURRENTUSER

"1;[[:Template:CURRENTUSER" cannot be used as a page name in this wiki.

>> News feeds

Failed to load RSS feed from http://www.sciencedaily.com/rss/health_medicine/malaria.xml: HTTP request failed due to unknown error. Failed to load RSS feed from http://www.hubmed.org/feeds/rss.cgi?q=malaria: HTTP request failed due to unknown error.

Quick Search See all query results
 

Species:

Name/Id (*,? as wildcard):

Namesource:

Chromosome:

Band:

Result as

Save as Concept



Semantic Searches

These searches allow to answer complex questions by combining multiple simpler search results and to fine tune and save the result sets.

more ...

This is a graph with borders and nodes. Maybe there is an Imagemap used so the nodes may be linking to some Pages.


  • Build-in searches:

Write Semantic Query   •   Search by Property   •   Semantic Drilldown

Example data



  • Geocoded data

M A P S

Exmapsh.jpg

with i.e. Anopheles, Plasmodium, Malaria net distribution data